]> 2009/04/07 OpenCyc Knowledge Base Copyright© 2001-2009 Cycorp, Inc., http://www.cyc.com/, Austin, TX, USA This file contains an OWL representation of information contained in the OpenCyc Knowledge Base. The content of this OWL file is licensed under the Creative Commons Attribution 3.0 license whose text can be found at http://creativecommons.org/licenses/by/3.0/legalcode. The content of this OWL file, including the OpenCyc content it represents, constitutes the "Work" referred to in the Creative Commons license. The terms of this license equally apply to, without limitation, renamings and other logically equivalent reformulations of the content of this OWL file (or portions thereof) in any natural or formal language, as well as to derivations of this content or inclusion of it in other ontologies. Mappings between OpenCyc terms and Wikipedia article names provided by Olena Medelyan and Catherine Legg, University of Waikato, NZ under a Creative Commons Attribution 3.0 license. externalID A unique, language-neutral, variable-sized identifier for a concept that can be used to refer unambiguously to that concept across OWL exports or across Cyc inference engines. label A natural-language representation for a concept that is both human readable and readable by the Cyc inference engine. These terms are not guaranteed to refer to the same concept across time but are guaranteed to be consistent within a particular OWL export. Use 'cycAnnot:externalID' for unambiguously referring to a concept across OWL exports or across Cyc inference engines. type of protein molecule The collection of all instances of <a href="http://sw.opencyc.org/concept/Mx4rvt8DM5wpEbGdrcN5Y29ycA" class="cyc_term">MoleculeTypeByChemicalSpecies</a> whose instances are protein molecules (see <a href="http://sw.opencyc.org/concept/Mx4rv0ARKpwpEbGdrcN5Y29ycA" class="cyc_term">ProteinMolecule</a>). ProteinMoleculeTypeByChemicalSpecies type of protein types of protein molecule kinds of proteins variety of protein kind of protein proteins protein type kinds of protein varieties of protein variety of protein molecule protein molecule type type of proteins protein protein types protein molecule types kinds of protein molecule types of proteins kind of proteins types of protein kind of protein molecule varieties of protein molecule type of bacterial protein BacterialProteinType A type level collection. Each instance is a type of protein found in bacteria. IgE AntibodyIgE The collection of all IgE antibodies. A type of <a href="http://sw.opencyc.org/concept/Mx4rImDPUpx2Ed2AAABQjYGu0g" class="cyc_term">AntibodyMolecule</a>. AntibodyIgA The collection of all IgA antibodies. A type of <a href="http://sw.opencyc.org/concept/Mx4rImDPUpx2Ed2AAABQjYGu0g" class="cyc_term">AntibodyMolecule</a>. IgA A specialization of <a href="http://sw.opencyc.org/concept/Mx4rgAGASJyKEd2AAABQjYGu0g" class="cyc_term">GlobularProteinMolecule</a>. Each instance of <a href="http://sw.opencyc.org/concept/Mx4rR-pm6p5KEd2AAABQjYGu0g" class="cyc_term">MyoglobinMolecule</a> is a globular protein molecule. MyoglobinMolecule myoglobin molecule A class of <a href="http://sw.opencyc.org/concept/Mx4rm1b3FJCmEd2AAADggVbxzQ" class="cyc_term">ReceptorMolecule</a> that, when activated, expresses a protein that effects the reaborption of sodium into the cell, resulting in the excretion of potassium. mineralcorticoid receptor MineralocorticoidReceptor HemoglobinMolecule A specialization of <a href="http://sw.opencyc.org/concept/Mx4rgAGASJyKEd2AAABQjYGu0g" class="cyc_term">GlobularProteinMolecule</a>. Each instance of <a href="http://sw.opencyc.org/concept/Mx4rVHyfBpyLEd2AAABQjYGu0g" class="cyc_term">HemoglobinMolecule</a> is a globular protein molecule typically found within red blood cells and used by vertebrates to transport oxygen. hemoglobin molecule HumanSerumAlbuminProteinMolecule human serum albumin molecule A specialization of #$AlbuminProteinMolecule. Human sewrum albumin molecules play an importan role in regulating osmotic pressure. the prototypical protein molecule type ThePrototypicalProteinMoleculeType neuroglobin molecule NeuroglobinMolecule A specialization of <a href="http://sw.opencyc.org/concept/Mx4rgAGASJyKEd2AAABQjYGu0g" class="cyc_term">GlobularProteinMolecule</a>. This protein reversibly binds to oxygen and is notably found in the the nervous system, as well as endocrine tissues, among other body regions. A class of <a href="http://sw.opencyc.org/concept/Mx4rm1b3FJCmEd2AAADggVbxzQ" class="cyc_term">ReceptorMolecule</a> that has the ability to bind directly to DNA. nuclear receptor NuclearReceptor ReceptorMolecule receptor A subcollection of <a href="http://sw.opencyc.org/concept/Mx4rv0ARKpwpEbGdrcN5Y29ycA" class="cyc_term">ProteinMolecule</a>. Receptors reside in the plasma membrane of a cell and can bind with other molecules, called "ligands" to evoke a cellular response. The ability to so bind is a function of the chemical structures of the type of receptor and type of ligand. Ligands that have an appropriate structure to evoke a cellular response are considered agonists with respect to the class of receptors in question. Ligands that can bind without evoking a response are considered antagonists. The collection of all IgD antibodies. A type of <a href="http://sw.opencyc.org/concept/Mx4rImDPUpx2Ed2AAABQjYGu0g" class="cyc_term">AntibodyMolecule</a>. <a href="http://sw.opencyc.org/concept/Mx4rwGPMe5wpEbGdrcN5Y29ycA" class="cyc_term">AntibodyIgD</a> is a #$ProteinMoleculeType. IgD AntibodyIgD AntibodyIgM The collection of all IgM antibodies. A type of <a href="http://sw.opencyc.org/concept/Mx4rImDPUpx2Ed2AAABQjYGu0g" class="cyc_term">AntibodyMolecule</a>. IgM The collection of all IgG. A type of <a href="http://sw.opencyc.org/concept/Mx4rImDPUpx2Ed2AAABQjYGu0g" class="cyc_term">AntibodyMolecule</a>. IgG AntibodyIgG second-order Cyc collection The collection of all specializations of <a href="http://sw.opencyc.org/concept/Mx4rHIBS0h_TEdaAAABQ2rksLw" class="cyc_term">FirstOrderCollection</a>, that is, of all collections of (first-order) collections, and an instance of <a href="http://sw.opencyc.org/concept/Mx4rHUFI8h_TEdaAAABQ2rksLw" class="cyc_term">ThirdOrderCollection</a>. Instances of <a href="http://sw.opencyc.org/concept/Mx4rHQdVmB_TEdaAAABQ2rksLw" class="cyc_term">SecondOrderCollection</a> are collections of <a href="http://sw.opencyc.org/concept/Mx4rHIBS0h_TEdaAAABQ2rksLw" class="cyc_term">FirstOrderCollection</a>s. Any instance of any instance of any instance of <a href="http://sw.opencyc.org/concept/Mx4rHQdVmB_TEdaAAABQ2rksLw" class="cyc_term">SecondOrderCollection</a> is an <a href="http://sw.opencyc.org/concept/Mx4rvVjaApwpEbGdrcN5Y29ycA" class="cyc_term">Individual</a>. SecondOrderCollection The collection of all instances of <a href="http://sw.opencyc.org/concept/Mx4rvt8DM5wpEbGdrcN5Y29ycA" class="cyc_term">MoleculeTypeByChemicalSpecies</a> whose instances are protein molecules (see <a href="http://sw.opencyc.org/concept/Mx4rv0ARKpwpEbGdrcN5Y29ycA" class="cyc_term">ProteinMolecule</a>). type of protein molecule ProteinMoleculeTypeByChemicalSpecies A collection of <a href="http://sw.opencyc.org/concept/Mx4rvtppU5wpEbGdrcN5Y29ycA" class="cyc_term">CollectionType</a>s. Each instance of <a href="http://sw.opencyc.org/concept/Mx4rvprlOZwpEbGdrcN5Y29ycA" class="cyc_term">FacetingCollectionType</a> is a collection-type that "facets" -- i.e. stands in the <a href="http://sw.opencyc.org/concept/Mx4rvjldVJwpEbGdrcN5Y29ycA" class="cyc_term">facets_Generic</a> (q.v.) relation to -- another collection. Examples include <a href="http://sw.opencyc.org/concept/Mx4rvVibOJwpEbGdrcN5Y29ycA" class="cyc_term">AutomobileTypeByBrand</a> and <a href="http://sw.opencyc.org/concept/Mx4rANFO8Ec-EdaEKABQ2sS97g" class="cyc_term">MusicTypeByGenre</a>, which facet <a href="http://sw.opencyc.org/concept/Mx4rvViVwZwpEbGdrcN5Y29ycA" class="cyc_term">Automobile</a> and <a href="http://sw.opencyc.org/concept/Mx4rvVjOJpwpEbGdrcN5Y29ycA" class="cyc_term">Music</a>, respectively. FacetingCollectionType faceting collection type The collection of all instances of <a href="http://sw.opencyc.org/concept/Mx4rvt8DM5wpEbGdrcN5Y29ycA" class="cyc_term">MoleculeTypeByChemicalSpecies</a> whose instances are protein molecules (see <a href="http://sw.opencyc.org/concept/Mx4rv0ARKpwpEbGdrcN5Y29ycA" class="cyc_term">ProteinMolecule</a>). type of protein molecule ProteinMoleculeTypeByChemicalSpecies DB pedia OWL class DBPediaOWLClass A collection of collections. Each instance of this collection is a collection that corresponds to one of the classes in the DBPedia ontology. Pretty String (<a href="http://sw.opencyc.org/concept/Mx4rwLSVCpwpEbGdrcN5Y29ycA" class="cyc_term">prettyString</a> TERM STRING) means that STRING is the English word or expression (sequence of words) commonly used to refer to TERM. The predicate <a href="http://sw.opencyc.org/concept/Mx4rwLSVCpwpEbGdrcN5Y29ycA" class="cyc_term">prettyString</a> is used by the code which generates CycL to English paraphrases, but its applicability is not restricted to this use. prettyString protein molecule The collection of molecules of proteins. Instances are defined chemically as polymers made up of amino acids. Compare with <a href="http://sw.opencyc.org/concept/Mx4rvVjM3pwpEbGdrcN5Y29ycA" class="cyc_term">ProteinStuff</a>. ProteinMolecule MoleculeTypeByChemicalSpecies type of molecule classified by chemical species A type-level collection. Each instance is a collection of <a href="http://sw.opencyc.org/concept/Mx4rvVjwspwpEbGdrcN5Y29ycA" class="cyc_term">Molecule</a>s characterized by the fact that all of its instances are molecules with exactly the same chemical formula and structure. Type Genls typeGenls A <a href="http://sw.opencyc.org/concept/Mx4rvVkGXJwpEbGdrcN5Y29ycA" class="cyc_term">TaxonomicSlotForCollections</a> (q.v.) that can be used to relate a given collection to a collection-of-collections (see <a href="http://sw.opencyc.org/concept/Mx4rvtppU5wpEbGdrcN5Y29ycA" class="cyc_term">CollectionType</a>) all of whose instances are specializations of the given collection. <code>(<a href="http://sw.opencyc.org/concept/Mx4rvhOImJwpEbGdrcN5Y29ycA" class="cyc_term">typeGenls</a> COLTYPE COL)</code> means that every instance of <code>COLTYPE</code> has <code>COL</code> as a generalization (see <a href="http://sw.opencyc.org/concept/Mx4rvViBDpwpEbGdrcN5Y29ycA" class="cyc_term">genls</a>). For example, <code>(<a href="http://sw.opencyc.org/concept/Mx4rvhOImJwpEbGdrcN5Y29ycA" class="cyc_term">typeGenls</a> <a href="http://sw.opencyc.org/concept/Mx4rvVjWJ5wpEbGdrcN5Y29ycA" class="cyc_term">CreditCardTypeByBrand</a> <a href="http://sw.opencyc.org/concept/Mx4rvVjO6pwpEbGdrcN5Y29ycA" class="cyc_term">CreditCard</a>)</code> means that each type of credit card is a subcollection of the collection of all credit cards. Note that this does not imply that every subcollection of <a href="http://sw.opencyc.org/concept/Mx4rvVjO6pwpEbGdrcN5Y29ycA" class="cyc_term">CreditCard</a> is an instance of <a href="http://sw.opencyc.org/concept/Mx4rvVjWJ5wpEbGdrcN5Y29ycA" class="cyc_term">CreditCardTypeByBrand</a>. The collection of all instances of <a href="http://sw.opencyc.org/concept/Mx4rvt8DM5wpEbGdrcN5Y29ycA" class="cyc_term">MoleculeTypeByChemicalSpecies</a> whose instances are protein molecules (see <a href="http://sw.opencyc.org/concept/Mx4rv0ARKpwpEbGdrcN5Y29ycA" class="cyc_term">ProteinMolecule</a>). type of protein molecule ProteinMoleculeTypeByChemicalSpecies